CDS
| Accession Number | TCMCG057C43735 |
| gbkey | CDS |
| Protein Id | XP_018451698.1 |
| Location | complement(join(4580186..4580248,4588054..4588170,4588263..4588397,4588472..4589029,4589147..4589206,4589295..4589360,4589447..4589557,4589644..4589734,4589824..4589924,4590021..4590128,4590207..4590724,4590801..4591986)) |
| Gene | LOC108822980 |
| GeneID | 108822980 |
| Organism | Raphanus sativus |
Protein
| Length | 1037aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA344915 |
| db_source | XM_018596196.1 |
| Definition | PREDICTED: eukaryotic translation initiation factor 5B-like isoform X2 [Raphanus sativus] |
EGGNOG-MAPPER Annotation
| COG_category | J |
| Description | Contains the following InterPro domains Small GTP-binding protein (InterPro IPR005225), Translation elongation factor EFTu EF1A, domain 2 (InterPro IPR004161), Translation initiation factor 2 related (InterPro IPR015760), Protein synthesis factor, GTP-binding (InterPro IPR000795) |
| KEGG_TC | - |
| KEGG_Module |
M00161
[VIEW IN KEGG] |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko00002 [VIEW IN KEGG] ko00194 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03012 [VIEW IN KEGG] |
| KEGG_ko |
ko:K02703
[VIEW IN KEGG] ko:K03243 [VIEW IN KEGG] |
| EC |
1.10.3.9
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway |
ko00195
[VIEW IN KEGG] ko01100 [VIEW IN KEGG] ko03013 [VIEW IN KEGG] map00195 [VIEW IN KEGG] map01100 [VIEW IN KEGG] map03013 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGATCGGGAGAACACGAGCGCGTGTGGTGGTGACGAAAATCACCCCTTTGCCTTGTCCTCCAAGGGAAGTGAAAACCCTAATAAAGTTGTGATCACTGGAAAGAAGAAGAAGGGAAAGAAAGTTTGTAAACCGCATAAGGAGGAGAAGGATGATCACGAGATTGCTTTTTCCGGGGAAGATAAGTTGAAATCTAAGAATGTGGGGTTTGCAAGCTTTGATCTGCTTGGTGTAGAGGATGATGATATTAGTGCTGAAGTATGTGATGAGCTAATACTTGGGAGACAAGTTACCGAAGAAACTAATACTAAGAGTGAGGATGCTGGAGGAACCTCTAGGAGTAAGAAAAAGAAAAATAAGAGTGGAAAGACTGCACATGAAGAAGAGGATTTGGACAAGATTCTTGCAGAACTCGGGATCACTCCTGTTTCACCAGCACAACCTGAGCTAGTTGCACCTGCAGATGGCTCAAAGGATGAAGGAGAAGAAGAGACAGTCCTGTCAGTTTCAGCGAAGAAAAGGAAAAAGAAGAAGGATAAGGACAAGGACAAGAAAGTATCTGCTTCTTCTATGGAGGAGGCTAAGGAGGAGCCATCACAGCACCAGAAGAAAGTTCCTAAACACGTTCTAGAGATGCAAGAGATGGTTGCGCGGAGAAAGGAAGCAGAGGAGATGAAGAAGAAGGAAGAGGAAGAGAAGTTTAGGAAAGAGGAAGAGGAGCGACGCATGCAGGAAGAGCGAGAAAGAGAAGCCGAAAAGATTAAACAGAAGAGAAAGATGAGGGCTAAGGAGAAGCTGCAGAAGAAGAAGCAAGAGGGAGGGATTCTAACAGAAAAGCAGAAGAGGGACAAGGCTTTCAAGAACAAGATATTGTCTGATGCTGGTATGCTTCTTGCTTCAGATAAGAACAGTGATTCCTCAAAGCGTCCTGTTTATGGCAACAAAAGAAAACCAGCTCGCGGAAAAGCAAACGACTCTGCTTCAGAAGTAGTACCTACTTTGCATGAAGGAGATTCAACTGAGCTGGATAAGAAACAAGAAGCTGGTGATGAGGAGGATGATTGGGAAGCAAAAAGTGATGATTCTGTTGATATAATGGGTGATTATGATGATGATGGTGAAGATGTACCTTGGCTTGTGGTTAAGAAAGAGATCAAAGAAACTGCTTCAAAGGCCCATTGTTCAGGTCCTGTCACTGATACACTAGCATTGAAGGCTGGAGTTTCATGCAGGCCACAAAAATCTATACCTAATGTGGATGATGCTACTAGGCGGCCAAAAGATGCTAATGTCTCAGTAGTTAATGAAGTTGTTGAAGAAAGTCTTCGCTCTCCCATTTGCTGCATCATGGGCCATGTTGATACTGGCAAAACCAAGCTCTTGGACTGCATCAGAGGAACAAATGTTCAGGAAGGAGAAGCGGGAGGTATCACTCAGCAGATTGGTGCAACCTATTTCCCTGCAGAAAACATCCGTGAGAGGACCAAGGAGTTAAAACCCGACGCAAAACTCAAGGTGCCAGGTCTGTTGGTTATTGATACACCTGGACACGAGTCATTCTCGAATCTGAGGTCAAGGGGTTCAAACCTGTGCGACATTGCAATTCTAGTGGTGGACATAATGCATGGTCTAGAGCCACAAACCATAGAGTCTCTTAATCTGTTGAGAAAGAGGAACACAAAGTTCATTGTTGCCTTGAATAAGGTTGATAGGCTATATGGGTGGAAAACAAGCAAGAACGCTCCTATAGAGAAGGCTTTGGCGCTGCAATCGAAAGATGTGGTTATTGAATTTAACATGAGGCTCACTCATGTTATAACCCAGTTCAAAGAACAAGGACTCAACACTGAGATTTATTACAAGAACAGAGAAATGGGAGATACTATCAGTATTGTGCCTACTAGTGCTATTAGTGGGGAAGGGATTCCAGATCTGCTGCTATATTTGGTTATGTGGTCTCAGAAGACAATGGTTGAGAAACTTACATTTGTTGACAAAGTGCAGTGTACCGTCCTTGAGGTCAAAGTTATTGCAGGCCATGGTACAACAATTGATGTTGTTTTGGTCAATGGTGTACTCCATGAAGGTGACCAAATCGTTGCTTGTGGGTCACAGGGACCAATTATAACAACTGTTAGATCATTATTGACTCCTCATCCTATGAAAGAGCTACGTGTGAAGGGTACATATCTGCATCATAGAGTAGTAAAGGCTGCGCAATGTATCAAGATTACTGCACAGGGACTTGAACACGCCGTTGCTGGTACTTCCTTACATGTGATTGGACCTGATGTGGACGTGGAAGAAGCCAAGAAAACAGCCATGGAGGATATGAAGTCAATCATGAGCTGGGTTGACAAAAGCGGTGAAGGAGTTTACGTACAAGCTTCAACACTAGGATCTCTGGAAGCATTACTAGAGTTCTTGAAGTCTCCAGATGTGAAAATACCCGTCAGTGGTATTGGCCTAGGACCTGTGCATAAGAAGGATATCATGAAGGCCGGAGTAATGCTAGAGAAGAAGAAAGAGTACGCAACGATTCTTGCTTTTGACGTGAAGATAACTACAGAGGCTCGCGAACTAGCTGACAACATGGGAGTCAAGATCTTCTGCGCTGATATTATCTATCATCTGTTCGATCAGTTTAAAGGTTATGTCAAGGATGTCAGAGATGAAGAAAGGAAGGAAACAGCATCCGAAGTAGTGTTTCCATGTGTACTTAAGATTTTACCAGACCATGTCTTCAAAAGAGGAGACCCAATCATCCTTGGAATCGAGGTCATCGATGGTATACTCAAGGTTGGAACTCCCATGTGCTTTCTAAAAGAGATTGAGAAGTCGAGAGTGTTTGTTGATCTTGGTCGCGTTGCATCTATTCATAAAGACAAGAAGCCACTTGACGATGCTAAGAAAGGCCAGCAGGTTGCCATCAAGATCATTGCCTCTAACCCTGGAGAAGAGAAAACGTTTGGAGAGGACTTTGGTATAGAAGACGAGCTTGTCAGTCATATATCTAGGAGATCCATCGACATACTCAAAACACTCTACAGGAATGAGTTGAAGGACGAGTTTAAGCTTGTTAAGAAACTTAAAACGCTGTTCAAGATACAATAG |
| Protein: MDRENTSACGGDENHPFALSSKGSENPNKVVITGKKKKGKKVCKPHKEEKDDHEIAFSGEDKLKSKNVGFASFDLLGVEDDDISAEVCDELILGRQVTEETNTKSEDAGGTSRSKKKKNKSGKTAHEEEDLDKILAELGITPVSPAQPELVAPADGSKDEGEEETVLSVSAKKRKKKKDKDKDKKVSASSMEEAKEEPSQHQKKVPKHVLEMQEMVARRKEAEEMKKKEEEEKFRKEEEERRMQEEREREAEKIKQKRKMRAKEKLQKKKQEGGILTEKQKRDKAFKNKILSDAGMLLASDKNSDSSKRPVYGNKRKPARGKANDSASEVVPTLHEGDSTELDKKQEAGDEEDDWEAKSDDSVDIMGDYDDDGEDVPWLVVKKEIKETASKAHCSGPVTDTLALKAGVSCRPQKSIPNVDDATRRPKDANVSVVNEVVEESLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKPDAKLKVPGLLVIDTPGHESFSNLRSRGSNLCDIAILVVDIMHGLEPQTIESLNLLRKRNTKFIVALNKVDRLYGWKTSKNAPIEKALALQSKDVVIEFNMRLTHVITQFKEQGLNTEIYYKNREMGDTISIVPTSAISGEGIPDLLLYLVMWSQKTMVEKLTFVDKVQCTVLEVKVIAGHGTTIDVVLVNGVLHEGDQIVACGSQGPIITTVRSLLTPHPMKELRVKGTYLHHRVVKAAQCIKITAQGLEHAVAGTSLHVIGPDVDVEEAKKTAMEDMKSIMSWVDKSGEGVYVQASTLGSLEALLEFLKSPDVKIPVSGIGLGPVHKKDIMKAGVMLEKKKEYATILAFDVKITTEARELADNMGVKIFCADIIYHLFDQFKGYVKDVRDEERKETASEVVFPCVLKILPDHVFKRGDPIILGIEVIDGILKVGTPMCFLKEIEKSRVFVDLGRVASIHKDKKPLDDAKKGQQVAIKIIASNPGEEKTFGEDFGIEDELVSHISRRSIDILKTLYRNELKDEFKLVKKLKTLFKIQ |